Basic Information
Locus ID:
Sgl63288
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA7 | 8881318 | 8887511 | + | Sgl63288 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.53 | 42,008.39 Da | 49.52 | 78.62 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 2.45325E-30 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 145 | 194 | 1.87828E-31 | - |
| Pfam | PF00627 | UBA/TS-N domain | 348 | 383 | 9.0E-11 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 267 | 322 | 1.3E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 151 | 189 | 1.9E-14 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 9.6E-18 | IPR000626 |
| SUPERFAMILY | SSF46934 | UBA-like | 148 | 202 | 8.27E-13 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 90 | 2.12E-22 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 324 | 394 | 7.66E-15 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 264 | 329 | 4.45E-22 | IPR036353 |
| Gene3D | G3DSA:1.10.10.540 | - | 258 | 323 | 3.4E-27 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 341 | 388 | 2.1E-22 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 144 | 194 | 1.4E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 5.3E-27 | - |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.5E-16 | IPR000626 |
| SMART | SM00727 | CBM | 263 | 308 | 1.5E-4 | IPR006636 |
| SMART | SM00165 | uba_6 | 348 | 385 | 1.8E-7 | IPR015940 |
| SMART | SM00165 | uba_6 | 151 | 191 | 2.5E-6 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 390 | 1.5E-108 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 345 | 386 | 13.751749 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 149 | 192 | 12.715573 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.497412 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 342 | 358 | 5.2E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 359 | 373 | 5.2E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 374 | 389 | 5.2E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 293 | 315 | 5.2E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 241 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 107 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_021755143.1 | ubiquitin receptor RAD23d-like [Chenopodium quinoa] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A803M4E8 | Ubiquitin receptor RAD23 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology