Basic Information
Locus ID:
Sgl63138
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA7 | 7890390 | 7894457 | + | Sgl63138 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.91 | 154,059.55 Da | 44.71 | 87.28 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 468 | 735 | 1.66904E-53 | - |
| CDD | cd06222 | RNase_H_like | 1182 | 1304 | 3.07707E-17 | IPR044730 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 1014 | 1076 | 1.0E-13 | IPR026960 |
| Pfam | PF13456 | Reverse transcriptase-like | 1183 | 1306 | 4.7E-20 | IPR002156 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 474 | 734 | 7.6E-40 | IPR000477 |
| SUPERFAMILY | SSF56219 | DNase I-like | 3 | 205 | 4.61E-21 | IPR036691 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1180 | 1312 | 1.77E-11 | IPR012337 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 425 | 701 | 3.89E-14 | IPR043502 |
| Gene3D | G3DSA:3.30.420.10 | - | 1177 | 1307 | 5.9E-13 | IPR036397 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 1 | 207 | 1.1E-22 | IPR036691 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 454 | 735 | 15.763281 | IPR000477 |
| ProSiteProfiles | PS50879 | RNase H domain profile. | 1176 | 1308 | 9.804729 | IPR002156 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24255.4 | - | 0 |
| RefSeq | XP_048497307.1 | uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris] | 0 |
| P0C2F6 | Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2N9INX5 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS53563 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||