Basic Information
Locus ID:
Sgl62568
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
FIZZY-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA7 | 4196235 | 4199596 | + | Sgl62568 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.53 | 56,498.55 Da | 45.36 | 71.13 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 214 | 490 | 2.22662E-41 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 365 | 405 | 2.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 455 | 490 | 8.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 325 | 360 | 3.2E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 191 | 490 | 1.46E-62 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 150 | 492 | 4.5E-124 | IPR015943 |
| SMART | SM00320 | WD40_4 | 451 | 490 | 1.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 321 | 360 | 1.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 363 | 405 | 5.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 237 | 277 | 0.045 | IPR001680 |
| SMART | SM00320 | WD40_4 | 193 | 234 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 408 | 448 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 280 | 317 | 0.21 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 328 | 369 | 13.449252 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 458 | 491 | 11.73468 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 458 | 491 | 14.184453 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 370 | 414 | 8.971213 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 245 | 286 | 9.004632 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 328 | 360 | 10.864685 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 477 | 491 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 392 | 406 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 94 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 196 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13840.1 | FIZZY-related 3. | 0 |
| RefSeq | XP_010690812.2 | protein FIZZY-RELATED 3 [Beta vulgaris subsp. vulgaris] | 0 |
| A0A396ISC0 | B-type cell cycle switch protein ccs52B OS=Medicago truncatula OX=3880 GN=CCS52B PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9S028 | WD_REPEATS_REGION domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_009880 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology