Basic Information
Locus ID:
Sgl62347
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA7 | 2794166 | 2800995 | - | Sgl62347 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.97 | 112,644.22 Da | 44.64 | 87.05 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17814 | LisH-like dimerisation domain | 11 | 34 | 2.8E-6 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 778 | 812 | 0.038 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 360 | 394 | 0.0071 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 257 | 347 | 1.15E-5 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 323 | 843 | 6.28E-42 | IPR011047 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 612 | 962 | 6.75E-22 | IPR011044 |
| Gene3D | G3DSA:2.130.10.10 | - | 835 | 975 | 1.9E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 586 | 834 | 3.7E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 428 | 585 | 2.0E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 205 | 422 | 3.0E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 619 | 660 | 38.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 730 | 770 | 3.5 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 0.0046 | IPR006594 |
| SMART | SM00320 | WD40_4 | 247 | 286 | 0.28 | IPR001680 |
| SMART | SM00320 | WD40_4 | 485 | 525 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 537 | 569 | 380.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 303 | 347 | 310.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 5.1E-6 | IPR006595 |
| SMART | SM00320 | WD40_4 | 353 | 394 | 6.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 397 | 438 | 88.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 773 | 812 | 1.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 856 | 897 | 0.35 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 780 | 821 | 12.480124 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 360 | 403 | 10.976305 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 253 | 295 | 9.138305 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 503 | 534 | 9.104886 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 780 | 814 | 10.15287 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 10.346251 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 360 | 398 | 8.702878 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.306951 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 381 | 395 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 799 | 813 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 236 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.1 | TOPLESS-related 1. | 0 |
| RefSeq | XP_048495165.1 | topless-related protein 1 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A5B6ZFY6 | TOPLESS OS=Davidia involucrata OX=16924 GN=Din_012336 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25213 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g030840 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018332 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62347, Sgl66884 |