Basic Information
Locus ID:
Sgl62040
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA7 | 674196 | 683170 | + | Sgl62040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.34 | 156,329.80 Da | 36.17 | 89.22 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 729 | 994 | 2.29219E-44 | - |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 1270 | 1318 | 5.7E-7 | IPR026960 |
| Pfam | PF01063 | Amino-transferase class IV | 201 | 297 | 2.6E-11 | IPR001544 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 734 | 973 | 1.9E-41 | IPR000477 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 640 | 982 | 5.34E-16 | IPR043502 |
| SUPERFAMILY | SSF56752 | D-aminoacid aminotransferase-like PLP-dependent enzymes | 150 | 297 | 3.01E-17 | IPR036038 |
| SUPERFAMILY | SSF56219 | DNase I-like | 298 | 464 | 1.98E-16 | IPR036691 |
| Gene3D | G3DSA:3.20.10.10 | - | 163 | 300 | 2.2E-21 | IPR043132 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 715 | 993 | 13.754379 | IPR000477 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54970.1 | D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein. | 0 |
| RefSeq | XP_021854772.1 | uncharacterized protein LOC110794134 [Spinacia oleracea] | 0 |
| P11369 | LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2 | 0 | |
| TrEMBL | F4NCH8 | Reverse transcriptase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010071, GOSA_00015070 |
| Amaranthaceae | Suaeda glauca | 45 | Sgl00660, Sgl00734, Sgl02856, Sgl04536, Sgl05678, Sgl09582 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000022031 |