Basic Information
Locus ID:
Sgl61919
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 57024390 | 57030992 | + | Sgl61919 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.11 | 71,585.58 Da | 36.86 | 95.05 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 412 | 444 | 2.5E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 313 | 621 | 3.24E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 474 | 635 | 2.3E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 284 | 468 | 5.7E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 311 | 350 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 404 | 444 | 7.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 446 | 492 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 359 | 398 | 2.8 | IPR001680 |
| SMART | SM00668 | ctlh | 36 | 94 | 3.9E-12 | IPR006595 |
| SMART | SM00320 | WD40_4 | 540 | 579 | 48.0 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 37 | 94 | 12.95505 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 411 | 453 | 11.711506 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 411 | 444 | 9.731054 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_042499992.1 | protein TPR3-like isoform X3 [Macadamia integrifolia] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1J6KGR5 | Topless-related protein 4 OS=Nicotiana attenuata OX=49451 GN=TPR4_0 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology