halophFGD

Basic Information

Locus ID: Sgl61918

Species & Taxonomic ID: Suaeda glauca & 397272

Genome Assembly: GWHEQCX00000000

Description: C-terminal to LisH motif.

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chrB6	57016969	57021991	+	Sgl61918

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.82	65,324.66 Da	39.09	93.16	-0.16

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	351	384	0.0049	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	249	567	9.16E-31	IPR036322
Gene3D	G3DSA:2.130.10.10	-	238	470	2.0E-25	IPR015943
Gene3D	G3DSA:2.130.10.10	-	479	578	6.2E-6	IPR015943
SMART	SM00668	ctlh	37	95	7.2E-8	IPR006595
SMART	SM00320	WD40_4	390	436	17.0	IPR001680
SMART	SM00320	WD40_4	487	526	25.0	IPR001680
SMART	SM00320	WD40_4	344	385	0.024	IPR001680
SMART	SM00320	WD40_4	299	338	130.0	IPR001680
SMART	SM00320	WD40_4	240	279	0.013	IPR001680
ProSiteProfiles	PS50897	C-terminal to LisH (CTLH) motif profile.	37	95	11.08898	IPR006595
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	351	384	9.539323	IPR001680

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT3G15880.1	WUS-interacting protein 2.	0
RefSeq	XP_034918819.1	topless-related protein 4-like isoform X1 [Populus alba]	0
Swiss-Prot	Q27GK7	Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2	0
TrEMBL	A0A8X8C543	Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_057622 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Suaeda glauca	2	Sgl56387, Sgl61918