Basic Information
Locus ID:
Sgl61136
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 51871179 | 51879393 | - | Sgl61136 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 164,618.66 Da | 36.75 | 105.83 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 604 | 804 | 3.77155E-108 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 908 | 1202 | 6.81044E-89 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 291 | 578 | 1.45623E-96 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1225 | 1445 | 1.0395E-120 | - |
| Pfam | PF00005 | ABC transporter | 1245 | 1392 | 1.5E-31 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 622 | 756 | 3.0E-20 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 293 | 557 | 6.3E-22 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 911 | 1152 | 2.5E-31 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1216 | 1460 | 7.4E-67 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 601 | 826 | 1.84E-56 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 908 | 1209 | 6.41E-54 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 280 | 588 | 2.09E-31 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 585 | 854 | 1.0E-73 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 872 | 1208 | 1.0E-60 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 261 | 584 | 3.7E-46 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1211 | 1463 | 5.9E-79 | IPR027417 |
| SMART | SM00382 | AAA_5 | 631 | 804 | 5.1E-14 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1253 | 1445 | 9.1E-13 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 604 | 827 | 22.289024 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 290 | 570 | 31.413031 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1227 | 1461 | 18.854336 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 910 | 1190 | 38.210537 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 729 | 743 | - | IPR017871 |
| Coils | Coil | Coil | 451 | 471 | - | - |
| Coils | Coil | Coil | 840 | 860 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021859153.1 | ABC transporter C family member 3-like isoform X1 [Spinacia oleracea] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LN56 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology