Basic Information
Locus ID:
Sgl60961
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
E3 ubiquitin ligase SUD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 50834973 | 50837653 | + | Sgl60961 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.88 | 44,296.36 Da | 45.78 | 88.49 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16702 | RING_CH-C4HC3_MARCH6 | 71 | 120 | 7.94272E-32 | - |
| Pfam | PF12906 | RING-variant domain | 72 | 118 | 2.2E-16 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 66 | 122 | 5.55E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 56 | 129 | 1.3E-23 | IPR013083 |
| SMART | SM00744 | ringv_2 | 71 | 119 | 8.3E-25 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 72 | 119 | 8.623992 | IPR001841 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 64 | 125 | 23.465708 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 42 | - | - |
| Coils | Coil | Coil | 281 | 308 | - | - |
| Coils | Coil | Coil | 365 | 365 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34100.2 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010691732.2 | probable E3 ubiquitin ligase SUD1 [Beta vulgaris subsp. vulgaris] | 0 |
| F4JKK0 | Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis thaliana OX=3702 GN=SUD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QM38 | E3 ubiquitin ligase SUD1 OS=Spinacia oleracea OX=3562 GN=SOVF_163610 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28661 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl60961 |
| Salicaceae | Populus euphratica | 1 | populus_peu36319 |