Basic Information
Locus ID:
Sgl60933
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 50658753 | 50659455 | + | Sgl60933 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.49 | 18,226.01 Da | 54.69 | 94.41 | 0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 93 | 136 | 4.50657E-11 | - |
| Pfam | PF13639 | Ring finger domain | 92 | 136 | 1.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 86 | 141 | 5.89E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 69 | 140 | 1.3E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 93 | 135 | 1.5E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 93 | 136 | 13.359705 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11360.1 | RING-H2 finger A1B. Encodes a putative RING-H2 finger protein RHA1b. | 0 |
| RefSeq | XP_021773494.1 | RING-H2 finger protein ATL79-like [Chenopodium quinoa] | 0 |
| Q9SUS5 | E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 SV=1 | 0 | |
| TrEMBL | A0A061E1W0 | RING/U-box superfamily protein, putative OS=Theobroma cacao OX=3641 GN=TCM_007616 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21858 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21780 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009898 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55719, Sgl60933 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000036867, gene:ENSEOMG00000050832 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0004820, CQ.Regalona.r1.9AG0019800 |
| Asteraceae | Flaveria trinervia | 7 | Ftri18G16887, Ftri18G33262, Ftri1G07426, Ftri1G12042 ... |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G38140.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027396m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g37610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g066530.2N |
| Plantaginaceae | Plantago ovata | 3 | Pov_00039059, Pov_00039061, Pov_00039062 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG09.344 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4 |
| Solanaceae | Solanum chilense | 2 | SOLCI000446100, SOLCI004491000 |