Basic Information
Locus ID:
Sgl60851
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 50202572 | 50208672 | + | Sgl60851 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 136,892.78 Da | 32.21 | 90.38 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 9 | 317 | 3.11891E-76 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 45 | 79 | 6.6E-5 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 342 | 768 | 4.0E-132 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 241 | 276 | 3.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 84 | 121 | 2.8E-8 | IPR001680 |
| Pfam | PF06957 | Coatomer (COPI) alpha subunit C-terminus | 816 | 1217 | 1.9E-159 | IPR010714 |
| Pfam | PF00400 | WD domain, G-beta repeat | 126 | 163 | 3.9E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 198 | 231 | 5.1E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 315 | 8.85E-74 | IPR036322 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 237 | 547 | 6.8E-15 | IPR011048 |
| Gene3D | G3DSA:1.25.40.470 | - | 640 | 812 | 1.0E-64 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 319 | 7.6E-126 | IPR015943 |
| SMART | SM00320 | WD40_4 | 237 | 276 | 1.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 193 | 232 | 2.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 82 | 121 | 6.1E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 279 | 317 | 90.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2 | 37 | 31.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 124 | 163 | 1.2E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 40 | 79 | 9.2E-7 | IPR001680 |
| PIRSF | PIRSF003354 | Alpha-COP | 1 | 1213 | 0.0 | IPR016391 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 244 | 277 | 12.156496 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 200 | 234 | 10.601049 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 89 | 121 | 11.207411 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 131 | 164 | 12.499222 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 47 | 88 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 131 | 164 | 15.153581 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 89 | 130 | 14.117617 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 244 | 285 | 15.521181 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 47 | 79 | 10.363778 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 200 | 241 | 13.014815 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 150 | 164 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 150 | 164 | 2.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 108 | 122 | 2.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 263 | 277 | 2.2E-7 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62020.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_021738685.1 | coatomer subunit alpha-1-like [Chenopodium quinoa] | 0 |
| Q94A40 | Coatomer subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=At1g62020 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LPB8 | Coatomer subunit alpha OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology