Basic Information
Locus ID:
Sgl60828
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 50058914 | 50060202 | + | Sgl60828 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 38,841.81 Da | 81.14 | 69.33 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 181 | 224 | 9.68131E-19 | - |
| Pfam | PF13639 | Ring finger domain | 181 | 224 | 3.8E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 169 | 234 | 1.09E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 162 | 234 | 7.1E-22 | IPR013083 |
| SMART | SM01197 | FANCL_C_2 | 178 | 232 | 0.0019 | - |
| SMART | SM00184 | ring_2 | 182 | 223 | 1.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 182 | 224 | 12.902362 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 266 | 280 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 312 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33565.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010690208.2 | E3 ubiquitin-protein ligase RING1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8LFY8 | RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9QED1 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_194000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg10876, Sbi_jg47444 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21691 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018752 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55618, Sgl60828 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018204, gene:ENSEOMG00000038713 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0027790, CQ.Regalona.r1.7BG0001610 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG15.1210 |