Basic Information
Locus ID:
Sgl60790
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 49743849 | 49751538 | + | Sgl60790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.49 | 102,253.42 Da | 40.42 | 98.89 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13136 | MATE_DinF_like | 488 | 933 | 3.04452E-101 | IPR044644 |
| CDD | cd00118 | LysM | 149 | 191 | 5.73388E-7 | IPR018392 |
| CDD | cd00118 | LysM | 84 | 130 | 6.06697E-9 | IPR018392 |
| Pfam | PF01476 | LysM domain | 85 | 131 | 1.1E-8 | IPR018392 |
| Pfam | PF01476 | LysM domain | 149 | 192 | 3.6E-7 | IPR018392 |
| Pfam | PF01554 | MatE | 496 | 663 | 1.1E-11 | IPR002528 |
| SUPERFAMILY | SSF54106 | LysM domain | 147 | 192 | 2.22E-6 | IPR036779 |
| SUPERFAMILY | SSF54106 | LysM domain | 84 | 132 | 6.41E-6 | IPR036779 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 83 | 137 | 8.6E-13 | IPR036779 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 138 | 207 | 1.8E-9 | IPR036779 |
| SMART | SM00257 | LysM_2 | 84 | 131 | 7.9E-7 | IPR018392 |
| SMART | SM00257 | LysM_2 | 148 | 192 | 1.1E-6 | IPR018392 |
| TIGRFAM | TIGR00797 | matE: MATE efflux family protein | 496 | 774 | 3.0E-51 | IPR002528 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 83 | 130 | 13.435058 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 147 | 191 | 12.299762 | IPR018392 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38380.5 | - | 0 |
| RefSeq | XP_048494405.1 | protein DETOXIFICATION 45, chloroplastic-like isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SVE7 | Protein DETOXIFICATION 45, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DTX45 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1Q3AWI0 | Protein DETOXIFICATION OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_03642 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology