Basic Information
Locus ID:
Sgl60739
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Belongs to the FPP GGPP synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 49382155 | 49391867 | - | Sgl60739 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 64,265.19 Da | 52.32 | 91.16 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00685 | Trans_IPPS_HT | 78 | 338 | 2.31555E-54 | IPR000092 |
| Pfam | PF00348 | Polyprenyl synthetase | 81 | 301 | 3.2E-31 | IPR000092 |
| Pfam | PF00646 | F-box domain | 405 | 442 | 1.2E-4 | IPR001810 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 56 | 321 | 1.73E-57 | IPR008949 |
| SUPERFAMILY | SSF81383 | F-box domain | 390 | 441 | 2.35E-7 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 460 | 556 | 4.51E-9 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 393 | 446 | 3.6E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 447 | 550 | 6.9E-7 | IPR032675 |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 51 | 349 | 7.8E-81 | IPR008949 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 402 | 448 | 8.994076 | IPR001810 |
| ProSitePatterns | PS00723 | Polyprenyl synthases signature 1. | 131 | 147 | - | IPR033749 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 380 | 401 | - | - |
| SFLD | SFLDS00005 | Isoprenoid Synthase Type I | 82 | 320 | 5.2E-42 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Reaction:
R01658 (Dimethylallyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranyl diphosphate)
R02003 (Geranyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + trans,trans-Farnesyl diphosphate)
R02061 (trans,trans-Farnesyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranylgeranyl diphosphate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38460.1 | geranylgeranyl reductase. | 0 |
| RefSeq | XP_021753003.1 | heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like [Chenopodium quinoa] | 0 |
| Q39108 | Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GGR PE=1 SV=2 | 0 | |
| TrEMBL | A0A5N5N2D8 | F-box domain-containing protein OS=Salix brachista OX=2182728 GN=DKX38_006456 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology