Basic Information
Locus ID:
Sgl60504
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 47824722 | 47827932 | + | Sgl60504 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 32,223.58 Da | 46.66 | 89.93 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14299 | Phloem protein 2 | 104 | 283 | 3.2E-36 | IPR025886 |
| Pfam | PF00646 | F-box domain | 12 | 57 | 1.1E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 65 | 9.03E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 135 | 6.0E-6 | - |
| SMART | SM00256 | fbox_2 | 17 | 57 | 8.4E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 11 | 57 | 11.19311 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02230.1 | phloem protein 2-B1. | 0 |
| RefSeq | XP_021850588.1 | putative F-box protein PP2-B12 isoform X2 [Spinacia oleracea] | 0 |
| Q6NPT8 | F-box protein PP2-B1 OS=Arabidopsis thaliana OX=3702 GN=PP2B1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L8N8 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19528 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah000637, Ah000638, Ah000640, Ah000641 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g116860 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30511, Sbi_jg58736 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28606 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014960 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55244, Sgl60504 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007243, gene:ENSEOMG00000022548 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0022820, CQ.Regalona.r1.5BG0024210 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.919, evm.TU.LG09.1052, evm.TU.LG26.945 |