Basic Information
Locus ID:
Sgl60408
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 47001546 | 47006518 | + | Sgl60408 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 50,481.10 Da | 46.72 | 75.13 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 29 | 349 | 0.0 | - |
| Pfam | PF00850 | Histone deacetylase domain | 43 | 347 | 2.0E-85 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 24 | 400 | 5.28E-124 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 14 | 415 | 2.2E-135 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 11 | 447 | 6.4E-202 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 284 | 294 | 2.0E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 199 | 214 | 2.0E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 167 | 190 | 2.0E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 45 | 62 | 3.0E-29 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 262 | 280 | 3.0E-29 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 78 | 96 | 3.0E-29 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 245 | 258 | 3.0E-29 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 406 | 450 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 427 | 441 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_010678848.1 | histone deacetylase 6 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RE39 | Histone deacetylase OS=Spinacia oleracea OX=3562 GN=SOVF_077050 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology