Basic Information
Locus ID:
Sgl60396
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 46898484 | 46922607 | - | Sgl60396 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 298,137.06 Da | 43.94 | 91.75 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 404 | 442 | 4.8E-10 | IPR001810 |
| Pfam | PF00646 | F-box domain | 779 | 817 | 4.8E-10 | IPR001810 |
| Pfam | PF00646 | F-box domain | 1154 | 1192 | 4.8E-10 | IPR001810 |
| Pfam | PF00646 | F-box domain | 29 | 67 | 1.1E-9 | IPR001810 |
| Pfam | PF00646 | F-box domain | 2220 | 2258 | 4.8E-10 | IPR001810 |
| Pfam | PF04434 | SWIM zinc finger | 509 | 523 | 12.0 | IPR007527 |
| Pfam | PF04434 | SWIM zinc finger | 884 | 898 | 12.0 | IPR007527 |
| Pfam | PF04434 | SWIM zinc finger | 1634 | 1648 | 12.0 | IPR007527 |
| Pfam | PF04434 | SWIM zinc finger | 1259 | 1273 | 12.0 | IPR007527 |
| Pfam | PF04434 | SWIM zinc finger | 134 | 148 | 12.0 | IPR007527 |
| Pfam | PF00646 | F-box domain | 1838 | 1876 | 1.3E-9 | IPR001810 |
| Pfam | PF00646 | F-box domain | 1529 | 1567 | 4.8E-10 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 774 | 846 | 5.1E-15 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 1149 | 1221 | 5.1E-15 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 1831 | 1881 | 5.49E-14 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 2215 | 2287 | 1.05E-14 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 399 | 471 | 5.1E-15 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 1524 | 1596 | 1.02E-14 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 20 | 96 | 6.28E-15 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 403 | 440 | 2.9E-9 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 24 | 68 | 1.5E-8 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 1528 | 1565 | 2.9E-9 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 1837 | 1874 | 3.2E-8 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 2219 | 2256 | 2.9E-9 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 778 | 815 | 2.9E-9 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 1153 | 1190 | 2.9E-9 | - |
| SMART | SM00256 | fbox_2 | 1529 | 1569 | 5.3E-12 | IPR001810 |
| SMART | SM00256 | fbox_2 | 779 | 819 | 5.3E-12 | IPR001810 |
| SMART | SM00256 | fbox_2 | 29 | 69 | 6.4E-12 | IPR001810 |
| SMART | SM00256 | fbox_2 | 2220 | 2260 | 5.3E-12 | IPR001810 |
| SMART | SM00256 | fbox_2 | 1838 | 1878 | 8.8E-12 | IPR001810 |
| SMART | SM00256 | fbox_2 | 404 | 444 | 5.3E-12 | IPR001810 |
| SMART | SM00256 | fbox_2 | 1154 | 1194 | 5.3E-12 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 912 | 1118 | 3.1E-19 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 162 | 368 | 3.1E-19 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 1662 | 1818 | 9.9E-15 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 1978 | 2176 | 6.5E-19 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 1287 | 1493 | 3.1E-19 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 537 | 743 | 3.1E-19 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 2353 | 2559 | 1.8E-19 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1838 | 1878 | 10.822189 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 29 | 69 | 11.060639 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1529 | 1569 | 11.00765 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1154 | 1194 | 11.00765 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 2220 | 2260 | 11.00765 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 404 | 444 | 11.00765 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 779 | 819 | 11.00765 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16210.1 | F-box family protein. | 0 |
| RefSeq | XP_021754851.1 | F-box/kelch-repeat protein At3g06240-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9LU24 | Putative F-box protein At3g16210 OS=Arabidopsis thaliana OX=3702 GN=At3g16210 PE=4 SV=1 | 0 | |
| TrEMBL | A0A803L060 | Protein DETOXIFICATION OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 6 | gene_14979, gene_14980, gene_15000, gene_16994, gene_2093 ... |
| Amaranthaceae | Atriplex hortensis | 4 | Ah003124, Ah012204, Ah031133, Ah031136 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg26525, Sbi_jg26526, Sbi_jg29415, Sbi_jg34037 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15056, Seu_jg6323 |
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00000790, GOSA_00000791, GOSA_00000792, GOSA_00011322 |
| Amaranthaceae | Suaeda glauca | 16 | Sgl12017, Sgl15992, Sgl31878, Sgl37156, Sgl46157, Sgl46158 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000022421, gene:ENSEOMG00000034528 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.1AG0000690, CQ.Regalona.r1.2BG0028260 ... |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG26.202 |