Basic Information
Locus ID:
Sgl60276
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 46233137 | 46241741 | - | Sgl60276 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 183,248.42 Da | 45.67 | 69.24 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 1080 | 1119 | 3.81886E-16 | - |
| Pfam | PF16135 | Tify domain binding domain | 1020 | 1049 | 1.2E-7 | IPR032308 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 1265 | 1355 | 8.71E-5 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1066 | 1121 | 4.87E-13 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1068 | 1171 | 3.9E-18 | IPR013083 |
| SMART | SM00249 | PHD_3 | 1121 | 1180 | 18.0 | IPR001965 |
| SMART | SM00249 | PHD_3 | 1079 | 1120 | 2.2E-10 | IPR001965 |
| SMART | SM00384 | AT_hook_2 | 575 | 587 | 13.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 749 | 761 | 71.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 413 | 425 | 8.7 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 499 | 511 | 0.25 | IPR017956 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 1077 | 1122 | 9.632401 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 1080 | 1119 | - | IPR019786 |
| PRINTS | PR00929 | AT-hook-like domain signature | 497 | 508 | 8.4E-6 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 573 | 583 | 8.4E-6 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 413 | 423 | 8.4E-6 | IPR017956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 935 | 961 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 676 | 692 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 735 | 765 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 338 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 655 | 675 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 382 | 412 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 338 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 134 | 148 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 250 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 429 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1584 | 1605 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 935 | 974 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1537 | 1558 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1537 | 1559 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 486 | 707 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 453 | 474 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 568 | 625 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G36740.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein. | 0 |
| RefSeq | XP_010679053.2 | uncharacterized protein LOC104894503 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RSQ4 | PHD-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_032500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology