Basic Information
Locus ID:
Sgl60159
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 45440563 | 45440985 | + | Sgl60159 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.19 | 15,025.93 Da | 24.21 | 101.14 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 66 | 128 | 1.84465E-19 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 66 | 127 | 1.2E-11 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 2 | 49 | 4.3E-8 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 2 | 129 | 7.52E-35 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 54 | 1.7E-12 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 55 | 134 | 3.1E-24 | - |
| SMART | SM00054 | efh_1 | 27 | 55 | 0.52 | IPR002048 |
| SMART | SM00054 | efh_1 | 102 | 130 | 3.1E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 66 | 94 | 5.4E-6 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 62 | 97 | 14.931837 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 98 | 133 | 12.086506 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 1 | 22 | 8.460104 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 23 | 58 | 10.608049 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 36 | 48 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 111 | 123 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 75 | 87 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_021731344.1 | probable calcium-binding protein CML15 [Chenopodium quinoa] | 0 |
| Q9LI84 | Probable calcium-binding protein CML16 OS=Arabidopsis thaliana OX=3702 GN=CML16 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803MXJ6 | Calcium-binding protein CML16 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology