Basic Information
Locus ID:
Sgl60145
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 45344471 | 45351780 | + | Sgl60145 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.27 | 74,083.88 Da | 50.13 | 74.08 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13423 | Ubiquitin carboxyl-terminal hydrolase | 247 | 524 | 3.1E-11 | IPR028881 |
| Pfam | PF01343 | Peptidase family S49 | 536 | 581 | 1.2E-6 | IPR002142 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 358 | 512 | 1.73E-35 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 262 | 521 | 9.7E-39 | - |
| Gene3D | G3DSA:3.90.226.10 | - | 522 | 635 | 4.7E-13 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 279 | 587 | 16.198946 | IPR028889 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 252 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_010681055.2 | ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MCI2 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||