Basic Information
Locus ID:
Sgl60079
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 44963740 | 44964621 | - | Sgl60079 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.74 | 34,062.02 Da | 37.14 | 78.02 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 253 | 284 | 2.4E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 193 | 290 | 3.26E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 181 | 290 | 2.7E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 207 | 283 | 7.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 207 | 284 | 10.423858 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 250 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 250 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12190.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_029120847.1 | E3 ubiquitin-protein ligase MPSR1-like [Elaeis guineensis] | 0 |
| TrEMBL | A0A8N4EZ76 | E3 ubiquitin-protein ligase MPSR1-like OS=Elaeis guineensis var. tenera OX=51953 GN=LOC109505986 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004708 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl54776, Sgl54777, Sgl60079 |