Basic Information
Locus ID:
Sgl59648
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 41908704 | 41909402 | - | Sgl59648 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 26,686.94 Da | 64.58 | 91.51 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 180 | 225 | 5.1E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 180 | 230 | 1.29E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 166 | 230 | 2.9E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 181 | 224 | 7.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 181 | 225 | 12.887609 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_031378208.1 | E3 ubiquitin-protein ligase SDIR1-like isoform X2 [Punica granatum] | 0 |
| TrEMBL | A0A2P6P2H6 | Putative aminoacyltransferase, E1 ubiquitin-activating enzyme OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0180831 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda glauca | 2 | Sgl54304, Sgl59648 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0004s00045.v1.0 |