Basic Information
Locus ID:
Sgl59484
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 40579441 | 40581170 | + | Sgl59484 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 35,289.34 Da | 39.05 | 87.58 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08238 | Sel1 repeat | 98 | 114 | 0.72 | IPR006597 |
| Pfam | PF01753 | MYND finger | 274 | 314 | 9.2E-7 | IPR002893 |
| Pfam | PF08238 | Sel1 repeat | 171 | 202 | 0.091 | IPR006597 |
| Pfam | PF08238 | Sel1 repeat | 131 | 169 | 0.4 | IPR006597 |
| Pfam | PF00646 | F-box domain | 19 | 58 | 2.2E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 83 | 1.06E-9 | IPR036047 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 270 | 315 | 1.03E-8 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 87 | 201 | 3.58E-11 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 69 | 218 | 9.1E-17 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 260 | 320 | 1.1E-10 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 272 | 314 | 10.963152 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50450.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_021847550.1 | F-box protein At1g67340-like [Spinacia oleracea] | 0 |
| Q9FK27 | F-box protein At5g50450 OS=Arabidopsis thaliana OX=3702 GN=At5g50450 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9AF49 | MYND-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology