Basic Information
Locus ID:
Sgl59481
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 40523462 | 40529714 | + | Sgl59481 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.92 | 232,376.52 Da | 44.70 | 75.88 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06222 | RNase_H_like | 1889 | 2009 | 1.14762E-24 | IPR044730 |
| CDD | cd01650 | RT_nLTR_like | 1177 | 1445 | 6.88791E-59 | - |
| Pfam | PF14111 | Domain of unknown function (DUF4283) | 131 | 268 | 1.6E-29 | IPR025558 |
| Pfam | PF13456 | Reverse transcriptase-like | 1890 | 2010 | 8.4E-24 | IPR002156 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1184 | 1444 | 9.4E-45 | IPR000477 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 1700 | 1784 | 5.8E-17 | IPR026960 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1126 | 1412 | 3.22E-18 | IPR043502 |
| SUPERFAMILY | SSF56219 | DNase I-like | 709 | 917 | 2.49E-25 | IPR036691 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1886 | 2013 | 1.52E-8 | IPR012337 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 697 | 917 | 8.5E-28 | IPR036691 |
| Gene3D | G3DSA:3.30.420.10 | - | 1888 | 2013 | 6.2E-12 | IPR036397 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 1164 | 1445 | 15.3943 | IPR000477 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 387 | 410 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 329 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 59 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20520.1 | RNA binding;RNA-directed DNA polymerases. | 0 |
| RefSeq | XP_048497307.1 | uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris] | 0 |
| P14381 | Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1 | 0 | |
| TrEMBL | A0A2N9IEV4 | CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50465 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00028516 |
| Amaranthaceae | Suaeda glauca | 12 | Sgl10339, Sgl12213, Sgl12320, Sgl15576, Sgl17452, Sgl17603 ... |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715302 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11805 |