Basic Information
Locus ID:
Sgl59434
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 40004989 | 40009244 | + | Sgl59434 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.27 | 118,665.03 Da | 45.98 | 56.68 | -0.85 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 511 | 826 | 4.202E-44 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 513 | 544 | 3.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 800 | 826 | 5.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 613 | 650 | 1.1E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 656 | 692 | 0.0087 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 507 | 830 | 7.83E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 408 | 576 | 1.3E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 604 | 854 | 1.9E-51 | IPR015943 |
| SMART | SM00320 | WD40_4 | 506 | 545 | 6.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 785 | 826 | 3.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 611 | 650 | 4.5E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 653 | 692 | 3.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 736 | 784 | 4.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 694 | 733 | 7.8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 618 | 653 | 12.288313 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 513 | 547 | 11.312864 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 513 | 554 | 13.716598 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 659 | 693 | 12.513543 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 618 | 659 | 15.521181 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 659 | 693 | 10.416506 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 803 | 826 | 9.840087 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 637 | 651 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 532 | 546 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 637 | 651 | 2.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 679 | 693 | 2.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 532 | 546 | 2.6E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 875 | 989 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 435 | 490 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 878 | 895 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 444 | 490 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 905 | 939 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 572 | 593 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_010677871.1 | WD repeat-containing protein 44 [Beta vulgaris subsp. vulgaris] | 0 |
| Q5JSH3 | WD repeat-containing protein 44 OS=Homo sapiens OX=9606 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8CGL2 | WD_REPEATS_REGION domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g110220 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology