Basic Information
Locus ID:
Sgl59408
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 39639409 | 39647542 | - | Sgl59408 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 204,092.09 Da | 34.43 | 83.31 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 484 | 750 | 1.86433E-50 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 491 | 732 | 2.5E-41 | IPR000477 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 1014 | 1077 | 6.2E-8 | IPR026960 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 422 | 743 | 3.74E-19 | IPR043502 |
| SUPERFAMILY | SSF56219 | DNase I-like | 20 | 219 | 3.38E-18 | IPR036691 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 3 | 220 | 1.4E-18 | IPR036691 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 471 | 737 | 13.139409 | IPR000477 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1256 | 1275 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1260 | 1275 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05850.1 | transposable element gene. | 0 |
| RefSeq | XP_048498238.1 | uncharacterized protein LOC125496736 [Beta vulgaris subsp. vulgaris] | 0 |
| O00370 | LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1 | 0 | |
| TrEMBL | F4NCH8 | Reverse transcriptase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010071, GOSA_00015070 |
| Amaranthaceae | Suaeda glauca | 45 | Sgl00660, Sgl00734, Sgl02856, Sgl04536, Sgl05678, Sgl09582 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000022031 |