Basic Information
Locus ID:
Sgl59223
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 37640956 | 37652337 | + | Sgl59223 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.58 | 58,408.55 Da | 52.44 | 81.74 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 342 | 516 | 2.60417E-107 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 9 | 104 | 2.0E-13 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 341 | 445 | 3.0E-18 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 340 | 472 | 1.7E-21 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 322 | 516 | 5.4E-71 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 1 | 116 | 5.4E-29 | - |
| SMART | SM00232 | pad1_6 | 341 | 469 | 3.1E-17 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 342 | 472 | 32.12228 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 278 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 278 | - | - |
| Coils | Coil | Coil | 91 | 111 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_021727742.1 | AMSH-like ubiquitin thioesterase 1 [Chenopodium quinoa] | 0 |
| Q8VYB5 | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RBA7 | MPN domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_086080 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology