Basic Information
Locus ID:
Sgl59114
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 36842734 | 36858561 | + | Sgl59114 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.95 | 53,951.26 Da | 51.13 | 74.74 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 451 | 477 | 3.8E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 416 | 444 | 4.1E-6 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 446 | 477 | 5.18E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 410 | 445 | 2.2E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 410 | 446 | 2.0E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 368 | 405 | 1.3E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 447 | 478 | 1.1E-9 | - |
| SMART | SM00547 | zf_4 | 451 | 475 | 2.7E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 418 | 442 | 6.9E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 378 | 402 | 9.3E-4 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 449 | 478 | 9.788849 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 376 | 405 | 9.314576 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 416 | 445 | 10.161491 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 453 | 472 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 380 | 399 | - | IPR001876 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_021839796.1 | zinc finger protein VAR3, chloroplastic-like [Spinacia oleracea] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9QPR9 | Zinc finger protein VAR3, chloroplastic OS=Spinacia oleracea OX=3562 GN=SOVF_155050 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology