Basic Information
Locus ID:
Sgl58611
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
SNF1-related protein kinase catalytic subunit alpha
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 26001385 | 26004118 | - | Sgl58611 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 31,479.95 Da | 40.07 | 92.76 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01189 | 16S rRNA methyltransferase RsmB/F | 185 | 274 | 7.0E-10 | IPR001678 |
| Pfam | PF00069 | Protein kinase domain | 19 | 190 | 9.2E-59 | IPR000719 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 186 | 275 | 7.71E-9 | IPR029063 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 16 | 191 | 2.02E-67 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 9 | 198 | 4.1E-72 | - |
| SMART | SM00220 | serkin_6 | 19 | 254 | 9.1E-59 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 19 | 275 | 40.202057 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 138 | 150 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 25 | 48 | - | IPR017441 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko04068 (FoxO signaling pathway)
map04068 (FoxO signaling pathway)
ko04140 (Autophagy - animal)
map04140 (Autophagy - animal)
ko04150 (mTOR signaling pathway)
map04150 (mTOR signaling pathway)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04211 (Longevity regulating pathway)
map04211 (Longevity regulating pathway)
ko04213 (Longevity regulating pathway - multiple species)
map04213 (Longevity regulating pathway - multiple species)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01090.1 | SNF1 kinase homolog 10. encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It can also interact with PRL1 DWD-containing protein. Based on in vitro degradation assays and cul4cs and prl1 mutants, there is evidence that AKIN10 is degraded in a proteasome-dependent manner, and that this depends on a CUL4-PRL1 E3 ligase | 0 |
| RefSeq | XP_021863781.1 | SNF1-related protein kinase catalytic subunit alpha KIN10-like [Spinacia oleracea] | 0 |
| Q38997 | SNF1-related protein kinase catalytic subunit alpha KIN10 OS=Arabidopsis thaliana OX=3702 GN=KIN10 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9R1K3 | non-specific serine/threonine protein kinase OS=Spinacia oleracea OX=3562 GN=SOVF_122500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah005482 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl47994, Sgl53349, Sgl58611 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0005760 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.1023.V1.1, AsparagusV1_01.2635.V1.1 ... |
| Brassicaceae | Schrenkiella parvula | 1 | SpUn0683_0010.v2.2 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00011914 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0320830.1 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr06G016290 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC3BG078850 |
| Poaceae | Zea mays | 1 | Zm00001eb107770_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-13837, nbis-gene-269, nbis-gene-36809 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4878 |
| Salicaceae | Populus euphratica | 1 | populus_peu09382 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC114076934 |