Basic Information
Locus ID:
Sgl58201
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Short Name:
UBC4
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 17499217 | 17511326 | + | Sgl58201 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 51,969.91 Da | 48.59 | 89.85 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 58 | 138 | 2.50912E-13 | - |
| CDD | cd00195 | UBCc | 327 | 425 | 4.08104E-30 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 327 | 425 | 9.0E-27 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 327 | 425 | 4.09E-30 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 286 | 433 | 2.0E-30 | IPR016135 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 38 | 147 | 1.2E-6 | IPR021109 |
| SMART | SM00212 | ubc_7 | 294 | 435 | 5.3E-21 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 283 | 433 | 26.912884 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41340.1 | ubiquitin conjugating enzyme 4. Belongs to Ubiquitin conjugating enzyme family. Gene expression is developmentally regulated. | 0 |
| RefSeq | XP_048502852.1 | uncharacterized protein LOC104896849 [Beta vulgaris subsp. vulgaris] | 0 |
| P42748 | Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana OX=3702 GN=UBC4 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7J9ITF2 | UBC core domain-containing protein OS=Gossypium armourianum OX=34283 GN=Goarm_021986 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||