Basic Information
Locus ID:
Sgl58138
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Retroviral aspartyl protease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 15808475 | 15810469 | - | Sgl58138 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.91 | 33,756.17 Da | 35.00 | 91.64 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 188 | 298 | 1.52E-22 | IPR012337 |
| SUPERFAMILY | SSF54849 | GroEL-intermediate domain like | 110 | 164 | 1.72E-15 | IPR027410 |
| Gene3D | G3DSA:1.10.560.10 | - | 84 | 106 | 1.9E-19 | IPR027413 |
| Gene3D | G3DSA:3.30.420.10 | - | 190 | 298 | 5.8E-23 | IPR036397 |
| Gene3D | G3DSA:3.30.260.10 | - | 107 | 160 | 1.9E-19 | IPR027410 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 183 | 298 | 13.623538 | IPR001584 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13470.1 | TCP-1/cpn60 chaperonin family protein. | 0 |
| RefSeq | XP_027941102.1 | uncharacterized protein LOC114194894 [Vigna unguiculata] | 0 |
| Q43831 | RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) OS=Secale cereale OX=4550 GN=CPN60 PE=2 SV=1 | 0 | |
| TrEMBL | A0A151TR75 | Retrotransposable element Tf2 OS=Cajanus cajan OX=3821 GN=KK1_008742 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg10957, Sbi_jg60501 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24478 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52858, Sgl58138 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G2451 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G2599 |