Basic Information
Locus ID:
Sgl57760
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 10830647 | 10844943 | - | Sgl57760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.49 | 79,388.35 Da | 46.95 | 87.77 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 287 | 423 | 1.17027E-72 | - |
| CDD | cd18015 | DEXHc_RecQ1 | 78 | 286 | 6.28302E-125 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 319 | 413 | 2.1E-16 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 426 | 481 | 3.3E-11 | IPR032284 |
| Pfam | PF00570 | HRDC domain | 610 | 672 | 4.3E-7 | IPR002121 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 98 | 266 | 2.6E-18 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 135 | 429 | 1.25E-55 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 10 | 229 | 3.19E-6 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 606 | 674 | 6.4E-11 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 52 | 286 | 2.0E-89 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 487 | 587 | 1.3E-24 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 287 | 484 | 2.6E-66 | IPR027417 |
| SMART | SM00487 | ultradead3 | 92 | 295 | 3.6E-27 | IPR014001 |
| SMART | SM00490 | helicmild6 | 333 | 414 | 3.4E-28 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 89 | 514 | 6.4E-162 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 304 | 453 | 20.527481 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 603 | 682 | 11.880919 | IPR002121 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 104 | 279 | 22.775801 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 682 | 698 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 676 | 704 | - | - |
| Coils | Coil | Coil | 14 | 52 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_021862388.1 | mediator of RNA polymerase II transcription subunit 34 [Spinacia oleracea] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R7T9 | ATP-dependent DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_097190 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology