Basic Information
Locus ID:
Sgl57701
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Domain of unknown function (DUF4283)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 10263900 | 10273863 | + | Sgl57701 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.83 | 89,552.88 Da | 46.19 | 73.03 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 642 | 776 | 1.70306E-36 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 642 | 777 | 2.8E-37 | IPR000608 |
| Pfam | PF14111 | Domain of unknown function (DUF4283) | 127 | 266 | 2.1E-31 | IPR025558 |
| SUPERFAMILY | SSF54495 | UBC-like | 628 | 789 | 3.11E-48 | IPR016135 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 293 | 314 | 4.19E-5 | IPR036875 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 634 | 793 | 4.2E-46 | IPR016135 |
| SMART | SM00343 | c2hcfinal6 | 295 | 311 | 0.0042 | IPR001878 |
| SMART | SM00212 | ubc_7 | 641 | 783 | 4.7E-36 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 638 | 783 | 40.081501 | IPR000608 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 296 | 310 | 10.394444 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 374 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 348 | 385 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36800.1 | RUB1 conjugating enzyme 1. RUB1 conjugating enzyme that conjugates CUL1 and is involved in auxin response and embryogenesis. RCE1 protein physically interacts with RBX1, which may be the E3 for CUL1. | 0 |
| RefSeq | XP_021849487.1 | uncharacterized protein LOC110789148 [Spinacia oleracea] | 0 |
| Q9SDY5 | NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana OX=3702 GN=RCE1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9CID4 | E2 ubiquitin-conjugating enzyme OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||