Basic Information
Locus ID:
Sgl57429
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 8154153 | 8163893 | - | Sgl57429 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 118,721.44 Da | 41.07 | 77.78 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 707 | 1022 | 3.80713E-39 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 796 | 834 | 0.077 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 886 | 918 | 0.0047 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 709 | 1029 | 2.26E-50 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 270 | 524 | 5.83E-14 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 269 | 534 | 2.3E-19 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 685 | 1026 | 5.7E-126 | IPR015943 |
| SMART | SM00320 | WD40_4 | 752 | 791 | 0.22 | IPR001680 |
| SMART | SM00320 | WD40_4 | 794 | 834 | 3.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 837 | 876 | 0.0052 | IPR001680 |
| SMART | SM00320 | WD40_4 | 702 | 741 | 0.16 | IPR001680 |
| SMART | SM00320 | WD40_4 | 987 | 1024 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 880 | 918 | 2.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 929 | 968 | 320.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 776 | 800 | 9.238559 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 887 | 920 | 10.574686 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 801 | 843 | 9.606159 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 887 | 927 | 13.014815 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 164 | 527 | 10.223842 | IPR000719 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 778 | 792 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 905 | 919 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 778 | 792 | 1.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 905 | 919 | 1.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 821 | 835 | 1.2E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 147 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 124 | 160 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| Coils | Coil | Coil | 566 | 586 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_021757615.1 | protein SPA1-RELATED 2-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9QJF8 | WD_REPEATS_REGION domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_178660 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology