Basic Information
Locus ID:
Sgl56893
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Cysteine-rich receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 3683647 | 3696131 | - | Sgl56893 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.09 | 112,068.62 Da | 44.38 | 86.41 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 126 | 393 | 1.80991E-85 | - |
| Pfam | PF00069 | Protein kinase domain | 121 | 390 | 2.7E-45 | IPR000719 |
| Pfam | PF00009 | Elongation factor Tu GTP binding domain | 855 | 971 | 1.0E-47 | IPR000795 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 609 | 689 | 3.1E-12 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 106 | 413 | 3.69E-80 | IPR011009 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 852 | 972 | 6.91E-56 | IPR027417 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 593 | 757 | 1.54E-28 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 721 | 838 | 1.43E-5 | IPR011009 |
| Gene3D | G3DSA:3.40.50.300 | - | 848 | 977 | 2.2E-56 | IPR027417 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 83 | 195 | 2.5E-39 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 196 | 405 | 4.2E-55 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 681 | 814 | 9.9E-7 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 577 | 680 | 2.7E-35 | - |
| SMART | SM00220 | serkin_6 | 120 | 392 | 8.9E-29 | IPR000719 |
| TIGRFAM | TIGR00231 | small_GTP: small GTP-binding protein domain | 856 | 970 | 5.3E-23 | IPR005225 |
| ProSiteProfiles | PS51722 | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 854 | 996 | 50.874046 | IPR000795 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 120 | 397 | 36.442413 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 126 | 148 | - | IPR017441 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 611 | 633 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 241 | 253 | - | IPR008271 |
| ProSitePatterns | PS00301 | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 897 | 912 | - | IPR031157 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 858 | 871 | 4.8E-12 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 940 | 951 | 4.8E-12 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 924 | 934 | 4.8E-12 | IPR000795 |
| PRINTS | PR00315 | GTP-binding elongation factor signature | 904 | 912 | 4.8E-12 | IPR000795 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 445 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23180.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 10. Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) | 0 |
| RefSeq | XP_021855872.1 | uncharacterized protein LOC110795196 [Spinacia oleracea] | 0 |
| Q8GYA4 | Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana OX=3702 GN=CRK10 PE=1 SV=3 | 0 | |
| TrEMBL | A0A803N3P3 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 5 | gene_14840, gene_14842, gene_14844, gene_14845, gene_14847 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004747 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg8167, Sbi_jg8168, Sbi_jg8169 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg11849, Seu_jg11851 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001510 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl51604, Sgl51605, Sgl56893 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5AG0000600 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG17.192 |