Basic Information
Locus ID:
Sgl56564
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 1209290 | 1209768 | - | Sgl56564 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 16,526.79 Da | 31.40 | 88.78 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 92 | 142 | 6.76012E-9 | - |
| Pfam | PF13639 | Ring finger domain | 91 | 142 | 7.8E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 91 | 147 | 2.05E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 65 | 147 | 3.5E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 92 | 141 | 3.8E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 92 | 142 | 12.489278 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_019104916.2 | E3 ubiquitin-protein ligase SIS3 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A2E9LI65 | RING-type domain-containing protein OS=Dehalococcoidia bacterium OX=2026734 GN=CL902_00785 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 5 | Ah024091, Ah024096, Ah024100, Ah024103, Ah028031 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g106860 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51260, Sgl56564 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000034526, gene:ENSEOMG00000035380 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0013220 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30983 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG03.1865 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g37240 |
| Zosteraceae | Zostera marina | 1 | Zosma01g36610.v3.1 |