Basic Information
Locus ID:
Sgl56517
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 920603 | 931531 | + | Sgl56517 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.43 | 143,752.20 Da | 57.22 | 78.25 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 825 | 881 | 2.4829E-31 | - |
| Pfam | PF01426 | BAH domain | 547 | 658 | 1.2E-9 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 843 | 879 | 3.0E-10 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 884 | 1249 | 3.4E-38 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 716 | 1249 | 5.34E-79 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 812 | 885 | 9.71E-12 | IPR016197 |
| Gene3D | G3DSA:2.30.30.490 | - | 480 | 644 | 8.1E-45 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 824 | 1266 | 9.1E-212 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 1045 | 1215 | 9.1E-212 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 703 | 805 | 7.4E-13 | - |
| SMART | SM00439 | BAH_4 | 543 | 659 | 7.2E-21 | IPR001025 |
| SMART | SM00298 | chromo_7 | 825 | 884 | 5.8E-7 | IPR000953 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 893 | 1246 | 1.3E-33 | IPR001525 |
| PIRSF | PIRSF037404 | DNMT1 | 699 | 788 | 2.4E-4 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 66 | 365 | 4000.0 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 1171 | 1264 | 5.7E-24 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 489 | 671 | 2.8E-6 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 877 | 1142 | 2.9E-41 | IPR017198 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 543 | 659 | 18.210522 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 716 | 1256 | 47.572647 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 826 | 879 | 11.598201 | IPR000953 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 849 | 869 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 896 | 908 | - | IPR018117 |
| ProSitePatterns | PS00095 | C-5 cytosine-specific DNA methylases C-terminal signature. | 1231 | 1249 | - | IPR031303 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 717 | 733 | 9.3E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 985 | 998 | 9.3E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 939 | 953 | 9.3E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 122 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_021765549.1 | DNA (cytosine-5)-methyltransferase CMT3-like [Chenopodium quinoa] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | A0A0K9RVU1 | Cytosine-specific methyltransferase OS=Spinacia oleracea OX=3562 GN=SOVF_028590 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology