Basic Information
Locus ID:
Sgl56421
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 200781 | 210105 | + | Sgl56421 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 137,851.91 Da | 48.54 | 80.45 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 1096 | 1138 | 1.93376E-19 | - |
| CDD | cd12108 | Hr-like | 584 | 730 | 4.933E-18 | - |
| CDD | cd12108 | Hr-like | 34 | 165 | 7.88997E-17 | - |
| Pfam | PF05495 | CHY zinc finger | 966 | 1041 | 1.9E-17 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 31 | 167 | 1.4E-9 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 584 | 731 | 2.5E-6 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1143 | 1200 | 5.7E-20 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 1094 | 1137 | 1.0E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1085 | 1142 | 3.89E-8 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 958 | 1022 | 1.7E-15 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1032 | 1089 | 2.75E-17 | IPR037275 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 575 | 779 | 1.3E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 31 | 182 | 5.9E-25 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1089 | 1140 | 3.1E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 1167 | 1202 | 1.7E-15 | - |
| SMART | SM00184 | ring_2 | 1096 | 1137 | 4.0E-5 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1031 | 1095 | 28.092831 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1096 | 1138 | 11.559839 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 959 | 1028 | 23.283245 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18910.1 | zinc ion binding;zinc ion binding. | 0 |
| RefSeq | XP_021733753.1 | zinc finger protein BRUTUS-like At1g18910 isoform X1 [Chenopodium quinoa] | 0 |
| F4IDY5 | Zinc finger protein BRUTUS-like At1g18910 OS=Arabidopsis thaliana OX=3702 GN=At1g18910 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RX52 | Zinc finger protein BRUTUS-like At1g18910 OS=Spinacia oleracea OX=3562 GN=SOVF_024830 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology