Basic Information
Locus ID:
Sgl56394
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB6 | 15673 | 21541 | + | Sgl56394 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 147,898.69 Da | 37.99 | 102.27 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 459 | 674 | 2.54305E-107 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1090 | 1310 | 2.33783E-108 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 774 | 1067 | 4.59886E-85 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 134 | 433 | 2.86408E-78 | IPR044746 |
| Pfam | PF00664 | ABC transporter transmembrane region | 774 | 1018 | 2.3E-32 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 492 | 626 | 1.0E-20 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1109 | 1257 | 2.0E-32 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 136 | 412 | 5.3E-24 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1083 | 1318 | 1.84E-66 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 773 | 1074 | 5.1E-51 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 123 | 438 | 2.49E-30 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 487 | 698 | 3.85E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1075 | 1328 | 4.3E-79 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 740 | 1073 | 9.7E-61 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 122 | 441 | 3.4E-45 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 464 | 712 | 1.4E-72 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1118 | 1310 | 3.6E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 501 | 674 | 6.5E-13 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1094 | 1326 | 17.987326 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 133 | 425 | 29.382336 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 775 | 1055 | 33.379078 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 466 | 697 | 21.715466 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 599 | 613 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021855122.1 | ABC transporter C family member 3-like [Spinacia oleracea] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KUU3 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology