Basic Information
Locus ID:
Sgl56388
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 55497673 | 55507722 | + | Sgl56388 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 116,500.90 Da | 36.90 | 82.69 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 815 | 847 | 4.5E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 716 | 1024 | 4.15E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 877 | 1037 | 4.5E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 690 | 869 | 1.3E-27 | IPR015943 |
| SMART | SM00668 | ctlh | 439 | 497 | 3.9E-12 | IPR006595 |
| SMART | SM00320 | WD40_4 | 849 | 895 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 807 | 847 | 7.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 943 | 982 | 48.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 714 | 753 | 8.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 762 | 801 | 5.3 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 814 | 856 | 11.711506 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 814 | 847 | 9.731054 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 440 | 497 | 12.95505 | IPR006595 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 393 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 220 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 269 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 399 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 173 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_019239337.1 | PREDICTED: topless-related protein 4 isoform X3 [Nicotiana attenuata] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1J6KGR5 | Topless-related protein 4 OS=Nicotiana attenuata OX=49451 GN=TPR4_0 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology