halophFGD

Basic Information

Locus ID: Sgl56387

Species & Taxonomic ID: Suaeda glauca & 397272

Genome Assembly: GWHEQCX00000000

Description: Topless-related protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chrA6	55491615	55496202	+	Sgl56387

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.29	66,521.49 Da	36.49	93.50	-0.15

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	365	398	0.005	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	263	545	4.4E-28	IPR036322
Gene3D	G3DSA:2.130.10.10	-	254	484	7.4E-26	IPR015943
SMART	SM00320	WD40_4	313	352	130.0	IPR001680
SMART	SM00668	ctlh	37	95	1.0E-7	IPR006595
SMART	SM00320	WD40_4	358	399	0.024	IPR001680
SMART	SM00320	WD40_4	501	540	25.0	IPR001680
SMART	SM00320	WD40_4	254	293	0.013	IPR001680
SMART	SM00320	WD40_4	404	450	17.0	IPR001680
ProSiteProfiles	PS50897	C-terminal to LisH (CTLH) motif profile.	37	95	11.023482	IPR006595
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	365	398	9.539323	IPR001680

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14963 (COMPASS component SWD3)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT1G80490.1	TOPLESS-related 1.	0
RefSeq	XP_042499993.1	protein TPR3-like isoform X4 [Macadamia integrifolia]	0
Swiss-Prot	Q0WV90	Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3	0
TrEMBL	A0A6N2KKK0	Topless-related protein 4-like OS=Salix viminalis OX=40686 GN=SVIM_LOCUS92671 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Suaeda glauca	2	Sgl56387, Sgl61918