Basic Information
Locus ID:
Sgl56386
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 55477588 | 55489327 | + | Sgl56386 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.97 | 138,206.70 Da | 41.11 | 75.91 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 667 | 799 | 2.14167E-68 | - |
| CDD | cd17920 | DEXHc_RecQ | 464 | 666 | 6.37834E-104 | - |
| Pfam | PF09382 | RQC domain | 888 | 1003 | 5.6E-22 | IPR018982 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 478 | 646 | 2.1E-19 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 1049 | 1116 | 2.9E-13 | IPR002121 |
| Pfam | PF16124 | RecQ zinc-binding | 801 | 880 | 6.5E-16 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 683 | 789 | 1.2E-17 | IPR001650 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1042 | 1122 | 1.61E-13 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 451 | 808 | 8.1E-43 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 665 | 931 | 5.11E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 667 | 884 | 3.9E-64 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1041 | 1132 | 2.3E-20 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 888 | 998 | 3.1E-18 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 437 | 666 | 1.5E-93 | IPR027417 |
| SMART | SM00341 | hrdc7 | 1044 | 1126 | 1.6E-8 | IPR002121 |
| SMART | SM00490 | helicmild6 | 709 | 790 | 4.1E-27 | IPR001650 |
| SMART | SM00956 | RQC_2 | 890 | 1001 | 3.1E-26 | IPR018982 |
| SMART | SM00487 | ultradead3 | 472 | 675 | 5.5E-31 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 468 | 941 | 8.6E-166 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 684 | 843 | 18.804611 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1044 | 1126 | 16.955652 | IPR002121 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 484 | 659 | 21.656643 | IPR014001 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 669 | 741 | 9.287184 | IPR001763 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 598 | 607 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1019 | 1041 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1019 | 1040 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1124 | 1174 | - | - |
| Coils | Coil | Coil | 306 | 326 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_021844419.1 | LOW QUALITY PROTEIN: ATP-dependent DNA helicase Q-like 4A [Spinacia oleracea] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9R0B5 | DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_127980 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology