Basic Information
Locus ID:
Sgl56123
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 53903353 | 53914885 | - | Sgl56123 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 202,297.81 Da | 47.10 | 82.69 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1455 | 1876 | 8.72982E-123 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1502 | 1881 | 1.4E-82 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 173 | 642 | 2.18E-40 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1448 | 1874 | 7.85E-96 | IPR035983 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1754 | 1879 | 5.9E-33 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 162 | 484 | 1.7E-51 | IPR011989 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1397 | 1644 | 1.0E-45 | - |
| SMART | SM00119 | hect_3 | 1466 | 1881 | 1.3E-83 | IPR000569 |
| SMART | SM00185 | arm_5 | 331 | 369 | 8.3 | IPR000225 |
| SMART | SM00185 | arm_5 | 288 | 328 | 73.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 205 | 246 | 94.0 | IPR000225 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1479 | 1881 | 55.994331 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1526 | 1544 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1035 | 1049 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 643 | 660 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1061 | 1096 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1264 | 1299 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 950 | 1003 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1122 | 1160 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 643 | 698 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 676 | 698 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1097 | 1118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1525 | 1549 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 949 | 1160 | - | - |
| Coils | Coil | Coil | 82 | 102 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_010690374.2 | E3 ubiquitin-protein ligase UPL3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R9A0 | HECT-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_097120 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology