Basic Information
Locus ID:
Sgl56111
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 53823632 | 53826412 | + | Sgl56111 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.65 | 44,404.28 Da | 43.67 | 79.77 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 16 | 86 | 3.6E-23 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 198 | 234 | 0.0053 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 342 | 377 | 3.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 284 | 321 | 2.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 239 | 277 | 0.0097 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 98 | 382 | 4.07E-51 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 392 | 6.6E-128 | IPR015943 |
| SMART | SM00320 | WD40_4 | 237 | 277 | 3.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 281 | 321 | 2.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 338 | 378 | 8.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 194 | 234 | 3.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 145 | 185 | 1.5E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 288 | 323 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 201 | 237 | 8.913786 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 288 | 323 | 11.207411 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 152 | 194 | 11.043142 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 345 | 379 | 9.305395 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 201 | 243 | 11.544415 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 152 | 188 | 8.992876 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 308 | 322 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 172 | 186 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 264 | 278 | 1.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 172 | 186 | 1.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 308 | 322 | 1.9E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35050.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. The predicted protein has a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_021775384.1 | WD-40 repeat-containing protein MSI2-like [Chenopodium quinoa] | 0 |
| O22469 | WD-40 repeat-containing protein MSI3 OS=Arabidopsis thaliana OX=3702 GN=MSI3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LGD6 | CAF1C_H4-bd domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology