Basic Information
Locus ID:
Sgl55966
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 52827850 | 52838136 | - | Sgl55966 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.18 | 113,657.29 Da | 34.98 | 106.60 | 0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 240 | 531 | 5.49967E-66 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 760 | 980 | 1.72757E-124 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 461 | 737 | 1.1786E-86 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 459 | 687 | 5.6E-33 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 779 | 927 | 6.9E-32 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 242 | 447 | 2.2E-14 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 752 | 993 | 1.24E-66 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 458 | 744 | 2.35E-51 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 229 | 449 | 8.63E-20 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 452 | 743 | 5.2E-55 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 745 | 999 | 4.7E-80 | IPR027417 |
| SMART | SM00382 | AAA_5 | 788 | 973 | 8.7E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 239 | 453 | 21.421173 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 762 | 996 | 18.947704 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 462 | 725 | 35.961178 | IPR011527 |
| Coils | Coil | Coil | 400 | 420 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021859169.1 | ABC transporter C family member 3-like [Spinacia oleracea] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LN56 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology