Basic Information
Locus ID:
Sgl55767
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 51619761 | 51620576 | - | Sgl55767 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.54 | 30,420.94 Da | 38.07 | 85.87 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 208 | 264 | 7.5E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 207 | 269 | 1.01E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 187 | 268 | 1.8E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 208 | 263 | 4.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 208 | 264 | 11.781134 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19950.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021773459.1 | E3 ubiquitin ligase BIG BROTHER-related-like [Chenopodium quinoa] | 0 |
| Q8LPN7 | E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LGV8 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26583 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg13624, Sbi_jg1407, Sbi_jg52269 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg20498, Seu_jg3331, Seu_jg9580 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005455 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl55767, Sgl60975, Sgl72806, Sgl73728, Sgl73751, Sgl76345 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.2119 |
| Zosteraceae | Zostera marina | 1 | Zosma03g00360.v3.1 |