Basic Information
Locus ID:
Sgl55520
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Belongs to the FPP GGPP synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 50076867 | 50080935 | - | Sgl55520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.64 | 43,947.77 Da | 38.69 | 85.84 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00685 | Trans_IPPS_HT | 78 | 338 | 1.55751E-56 | IPR000092 |
| Pfam | PF00348 | Polyprenyl synthetase | 81 | 301 | 1.7E-31 | IPR000092 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 56 | 322 | 5.28E-58 | IPR008949 |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 51 | 346 | 2.6E-81 | IPR008949 |
| ProSitePatterns | PS00723 | Polyprenyl synthases signature 1. | 131 | 147 | - | IPR033749 |
| SFLD | SFLDS00005 | Isoprenoid Synthase Type I | 82 | 322 | 9.305E-43 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Module:
Reaction:
R01658 (Dimethylallyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranyl diphosphate)
R02003 (Geranyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + trans,trans-Farnesyl diphosphate)
R02061 (trans,trans-Farnesyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranylgeranyl diphosphate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38460.1 | geranylgeranyl reductase. | 0 |
| RefSeq | XP_021753003.1 | heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like [Chenopodium quinoa] | 0 |
| Q39108 | Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GGR PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9RVN9 | Geranylgeranyl pyrophosphate synthase OS=Spinacia oleracea OX=3562 GN=SOVF_028920 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology