Basic Information
Locus ID:
Sgl55448
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 49519999 | 49530680 | + | Sgl55448 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 195,672.05 Da | 47.68 | 82.83 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1394 | 1815 | 4.43098E-123 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1441 | 1820 | 8.5E-83 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1387 | 1813 | 6.02E-96 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 128 | 581 | 9.46E-37 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 114 | 423 | 7.5E-45 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1693 | 1818 | 5.6E-33 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1336 | 1583 | 9.9E-46 | - |
| SMART | SM00119 | hect_3 | 1405 | 1820 | 1.7E-83 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1418 | 1820 | 56.025333 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 582 | 599 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1465 | 1483 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1203 | 1237 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1464 | 1488 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1000 | 1035 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 888 | 1098 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1061 | 1098 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 615 | 641 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1036 | 1057 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 582 | 641 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 974 | 988 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 889 | 942 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_010690374.2 | E3 ubiquitin-protein ligase UPL3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R9A0 | HECT-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_097120 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology