Basic Information
Locus ID:
Sgl55419
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
gag-polypeptide of LTR copia-type
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 49278001 | 49280898 | - | Sgl55419 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.14 | 107,306.79 Da | 49.05 | 73.11 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13976 | GAG-pre-integrase domain | 493 | 559 | 5.5E-11 | IPR025724 |
| Pfam | PF00665 | Integrase core domain | 576 | 671 | 7.1E-8 | IPR001584 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 78 | 215 | 6.6E-14 | - |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 571 | 729 | 5.94E-37 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 570 | 743 | 1.3E-33 | IPR036397 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 559 | 735 | 18.581999 | IPR001584 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 308 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 842 | 859 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 860 | 875 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 838 | 882 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G48050.1 | 0 | |
| RefSeq | XP_021320624.1 | uncharacterized protein LOC110437007 [Sorghum bicolor] | 0 |
| P04146 | Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3 | 0 | |
| TrEMBL | A0A5N6PI82 | Integrase catalytic domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_09120 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 11 | Sbi_jg22532, Sbi_jg22994, Sbi_jg35991, Sbi_jg47084 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg13583, Seu_jg220, Seu_jg24372 |
| Amaranthaceae | Suaeda glauca | 22 | Sgl20258, Sgl21425, Sgl22765, Sgl23137, Sgl26539, Sgl26751 ... |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000004351, gene:ENSEOMG00000049261 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30096180 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G03871 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g03155.v2.2 |
| Brassicaceae | Brassica nigra | 13 | BniB01g008680.2N, BniB01g011550.2N, BniB01g033040.2N ... |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno02g08420, gene.Cymno02g12120, gene.Cymno07g04820 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g15590, gene.Thate06g10480 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7277 |
| Plantaginaceae | Plantago ovata | 7 | Pov_00001112, Pov_00012497, Pov_00029344, Pov_00029907 ... |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G00201, Lb1G06209 |
| Poaceae | Echinochloa crus-galli | 3 | CH01.4204, CH02.4285, CH02.754 |
| Poaceae | Lolium multiflorum | 23 | gene-QYE76_000053, gene-QYE76_005675, gene-QYE76_009235 ... |
| Poaceae | Oryza coarctata | 7 | Oco02G011690, Oco02G031780, Oco03G007110, Oco03G009910 ... |
| Poaceae | Sporobolus alterniflorus | 24 | Chr01G024190, Chr01G024200, Chr05G013180, Chr05G013190 ... |
| Poaceae | Zoysia japonica | 7 | nbis-gene-15370, nbis-gene-31910, nbis-gene-43348 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g29300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC114075978 |
| Tamaricaceae | Reaumuria soongarica | 3 | MSTRG.20127_chr11_-, STRG.30077_chr10_+, gene_8045 |