Basic Information
Locus ID:
Sgl55167
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
F-box and associated interaction domains-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA6 | 47572673 | 47574010 | + | Sgl55167 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.53 | 52,591.30 Da | 46.08 | 80.11 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 31 | 67 | 4.8E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 30 | 101 | 3.14E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 30 | 67 | 2.2E-9 | - |
| SMART | SM00256 | fbox_2 | 31 | 71 | 4.7E-8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 138 | 306 | 2.3E-13 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 25 | 71 | 11.140122 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23880.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_021734128.1 | F-box protein CPR30-like [Chenopodium quinoa] | 0 |
| Q9LIR8 | F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LBN3 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 3 | Ah000544, Ah000545, Ah000548 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g117790 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017365 |
| Amaranthaceae | Suaeda glauca | 16 | Sgl02265, Sgl02998, Sgl03016, Sgl07416, Sgl08131, Sgl33489 ... |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000005978, gene:ENSEOMG00000020505 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5AG0023440, CQ.Regalona.r1.5BG0024920 ... |